Constrained Markovian dynamics of random graphs

We describe a new method for the random sampling of connected networks with a specified degree sequence. We consider both the case of simple graphs and that of loopless multigraphs. The constraints of fixed degrees and of connectedness are two of the most commonly needed ones when constructing null models for the practical analysis of physical or biological networks. Yet handling these constraints, let alone combining them, is non-trivial. Our method builds on a recently intr...

We have developed a steady state theory of complex transport networks used to model the flow of commodity, information, viruses, opinions, or traffic. Our approach is based on the use of the Markov chains defined on the graph representations of transport networks allowing for the effective network design, network performance evaluation, embedding, partitioning, and network fault tolerance analysis. Random walks embed graphs into Euclidean space in which distances and angles a...

The switching model is a Markov chain approach to sample graphs with fixed degree sequence uniformly at random. The recently invented Curveball algorithm for bipartite graphs applies several switches simultaneously (`trades'). Here, we introduce Curveball algorithms for simple (un)directed graphs which use single or simultaneous trades. We show experimentally that these algorithms converge magnitudes faster than the corresponding switching models.

In this paper, we study a class of stochastic processes, called evolving network Markov chains, in evolving networks. Our approach is to transform the degree distribution problem of an evolving network to a corresponding problem of evolving network Markov chains. We investigate the evolving network Markov chains, thereby obtaining some exact formulas as well as a precise criterion for determining whether the steady degree distribution of the evolving network is a power-law or...

We propose a Markov chain method to efficiently generate 'surrogate networks' that are random under the constraint of given vertex strengths. With these strength-preserving surrogates and with edge-weight-preserving surrogates we investigate the clustering coefficient and the average shortest path length of functional networks of the human brain as well as of the International Trade Networks. We demonstrate that surrogate networks can provide additional information about netw...

Statistical properties of binary complex networks are well understood and recently many attempts have been made to extend this knowledge to weighted ones. There is, however, a subtle difference between networks where weights are continuos variables and those where they account for discrete, distinguishable events, which we call multi-edge networks. In this work we face this problem introducing multi-edge networks as graphs where multiple (distinguishable) connections between ...

In statistical mechanical investigations on complex networks, it is useful to employ random graphs ensembles as null models, to compare with experimental realizations. Motivated by transcription networks, we present here a simple way to generate an ensemble of random directed graphs with, asymptotically, scale-free outdegree and compact indegree. Entries in each row of the adjacency matrix are set to be zero or one according to the toss of a biased coin, with a chosen probabi...

In this article we give an in depth overview of the recent advances in the field of equilibrium networks. After outlining this topic, we provide a novel way of defining equilibrium graph (network) ensembles. We illustrate this concept on the classical random graph model and then survey a large variety of recently studied network models. Next, we analyze the structural properties of the graphs in these ensembles in terms of both local and global characteristics, such as degree...

We develop a statistical mechanics approach for random networks with uncorrelated vertices. We construct equilibrium statistical ensembles of such networks and obtain their partition functions and main characteristics. We find simple dynamical construction procedures that produce equilibrium uncorrelated random graphs with an arbitrary degree distribution. In particular, we show that in equilibrium uncorrelated networks, fat-tailed degree distributions may exist only starting...

We study a simple model in which the growth of a network is determined by the location of one or more random walkers. Depending on walker speed, the model generates a spectrum of structures situated between well-known limiting cases. We demonstrate that the average degree observed by a walker is related to the global variance. Modulating the extent to which the location of node attachment is determined by the walker as opposed to random selection is akin to scaling the speed ...