Renormalization Group Transformation for Hamiltonian Dynamical Systems in Biological Networks

Complex networks have acquired a great popularity in recent years, since the graph representation of many natural, social and technological systems is often very helpful to characterize and model their phenomenology. Additionally, the mathematical tools of statistical physics have proven to be particularly suitable for studying and understanding complex networks. Nevertheless, an important obstacle to this theoretical approach is still represented by the difficulties to draw ...

While renormalization groups are fundamental in physics, renormalization of complex networks remains vague in its conceptual definition and methodology. Here, we propose a novel strategy to renormalize complex networks. Rather than resorting to handling the bare structure of a network, we overlay it with a readily renormalizable physical model, which reflects real-world scenarios with a broad generality. From the renormalization of the overlying system, we extract a rigorous ...

Nowadays, scaling methods for general large-scale complex networks have been developed. We proposed a new scaling scheme called "two-site scaling". This scheme was applied iteratively to various networks, and we observed how the degree distribution of the network changes by two-site scaling. In particular, networks constructed by the BA algorithm behave differently from the networks observed in the nature. In addition, an iterative scaling scheme can define a new renormalizin...

Recently, the concept of geometric renormalization group provides a good approach for studying the structural symmetry and functional invariance of complex networks. Along this line, we systematically investigate the finite-size scaling of structural and dynamical observables in geometric renormalization flows of synthetic and real evolutionary networks. Our results show that these observables can be well characterized by a certain scaling function. Specifically, we show that...

The renormalization group (RG) constitutes a fundamental framework in modern theoretical physics. It allows the study of many systems showing states with large-scale correlations and their classification in a relatively small set of universality classes. RG is the most powerful tool for investigating organizational scales within dynamic systems. However, the application of RG techniques to complex networks has presented significant challenges, primarily due to the intricate i...

The renormalization group is the cornerstone of the modern theory of universality and phase transitions, a powerful tool to scrutinize symmetries and organizational scales in dynamical systems. However, its network counterpart is particularly challenging due to correlations between intertwined scales. To date, the explorations are based on hidden geometries hypotheses. Here, we propose a Laplacian RG diffusion-based picture in complex networks, defining both the Kadanoff supe...

Graph Neural Networks (GNNs) have become essential for studying complex data, particularly when represented as graphs. Their value is underpinned by their ability to reflect the intricacies of numerous areas, ranging from social to biological networks. GNNs can grapple with non-linear behaviors, emerging patterns, and complex connections; these are also typical characteristics of complex systems. The renormalization group (RG) theory has emerged as the language for studying c...

We show that renormalization group (RG) theory applied to complex networks are useful to classify network topologies into universality classes in the space of configurations. The RG flow readily identifies a small-world/fractal transition by finding (i) a trivial stable fixed point of a complete graph, (ii) a non-trivial point of a pure fractal topology that is stable or unstable according to the amount of long-range links in the network, and (iii) another stable point of a f...

The Renormalization Group is crucial for understanding systems across scales, including complex networks. Renormalizing networks via network geometry, a framework in which their topology is based on the location of nodes in a hidden metric space, is one of the foundational approaches. However, the current methods assume that the geometric coupling is strong, neglecting weak coupling in many real networks. This paper extends renormalization to weak geometric coupling, showing ...

Scale invariance profoundly influences the dynamics and structure of complex systems, spanning from critical phenomena to network architecture. Here, we propose a precise definition of scale-invariant networks by leveraging the concept of a constant entropy loss rate across scales in a renormalization-group coarse-graining setting. This framework enables us to differentiate between scale-free and scale-invariant networks, revealing distinct characteristics within each class. ...