Network reconstruction via density sampling

We discuss two sampling schemes for selecting random subnets from a network: Random sampling and connectivity dependent sampling, and investigate how the degree distribution of a node in the network is affected by the two types of sampling. Here we derive a necessary and sufficient condition that guarantees that the degree distribution of the subnet and the true network belong to the same family of probability distributions. For completely random sampling of nodes we find tha...

This work examines the problem of graph learning over a diffusion network when data can be collected from a limited portion of the network (partial observability). The main question is to establish technical guarantees of consistent recovery of the subgraph of probed network nodes, i) despite the presence of unobserved nodes; and ii) under different connectivity regimes, including the dense regime where the probed nodes are influenced by many connections coming from the unobs...

Reconstructing complex networks from measurable data is a fundamental problem for understanding and controlling collective dynamics of complex networked systems. However, a significant challenge arises when we attempt to decode structural information hidden in limited amounts of data accompanied by noise and in the presence of inaccessible nodes. Here, we develop a general framework for robust reconstruction of complex networks from sparse and noisy data. Specifically, we dec...

The statistical modeling of random networks has been widely used to uncover interaction mechanisms in complex systems and to predict unobserved links in real-world networks. In many applications, network connections are collected via egocentric sampling: a subset of nodes is sampled first, after which all links involving this subset are recorded; all other information is missing. Compared with the assumption of ``uniformly missing at random", egocentrically sampled partial ne...

Network reconstruction consists in determining the unobserved pairwise couplings between $N$ nodes given only observational data on the resulting behavior that is conditioned on those couplings -- typically a time-series or independent samples from a graphical model. A major obstacle to the scalability of algorithms proposed for this problem is a seemingly unavoidable quadratic complexity of $O(N^2)$, corresponding to the requirement of each possible pairwise coupling being c...

Network (or matrix) reconstruction is a general problem which occurs if the margins of a matrix are given and the matrix entries need to be predicted. In this paper we show that the predictions obtained from the iterative proportional fitting procedure (IPFP) or equivalently maximum entropy (ME) can be obtained by restricted maximum likelihood estimation relying on augmented Lagrangian optimization. Based on the equivalence we extend the framework of network reconstruction to...

Owing to their capability of summarising interactions between elements of a system, networks have become a common type of data in many fields. As networks can be inhomogeneous, in that different regions of the network may exhibit different topologies, an important topic concerns their local properties. This paper focuses on the estimation of the local degree distribution of a vertex in an inhomogeneous network. The contributions are twofold: we propose an estimator based on l...

The vast majority of network datasets contains errors and omissions, although this is rarely incorporated in traditional network analysis. Recently, an increasing effort has been made to fill this methodological gap by developing network reconstruction approaches based on Bayesian inference. These approaches, however, rely on assumptions of uniform error rates and on direct estimations of the existence of each edge via repeated measurements, something that is currently unavai...

Most real world dynamic networks are evolved very fast with time. It is not feasible to collect the entire network at any given time to study its characteristics. This creates the need to propose local algorithms to study various properties of the network. In the present work, we estimate degree rank of a node without having the entire network. The proposed methods are based on the power law degree distribution characteristic or sampling techniques. The proposed methods are s...

Functional complex networks have meant a pivotal change in the way we understand complex systems, being the most outstanding one the human brain. These networks have classically been reconstructed using a frequentist approach that, while simple, completely disregards the uncertainty that derives from data finiteness. We here provide an alternative solution based on Bayesian inference, with link weights treated as random variables described by probability distributions, from w...