A Stochastic Evolutionary Model Exhibiting Power-Law Behaviour with an Exponential Cutoff

Many important real-world networks manifest "small-world" properties such as scale-free degree distributions, small diameters, and clustering. The most common model of growth for these networks is "preferential attachment", where nodes acquire new links with probability proportional to the number of links they already have. We show that preferential attachment is a special case of the process of molecular evolution. We present a new single-parameter model of network growth th...

We propose a new preferential attachment-based network growth model in order to explain two properties of growing networks: (1) the power-law growth of node degrees and (2) the decay of node relevance. In preferential attachment models, the ability of a node to acquire links is affected by its degree, its fitness, as well as its relevance which typically decays over time. After a review of existing models, we argue that they cannot explain the above-mentioned two properties (...

We introduce a minimalistic model based on dynamic node deletion and node duplication with heterodimerisation. The model is intended to capture the essential features of the evolution of protein interaction networks. We derive an exact two-step rate equation to describe the evolution of the degree distribution. We present results for the case of a fixed-size network. The results are based on the exact numerical solution to the rate equation which are consistent with Monte Car...

We propose and analyze a stochastic model which explains, analytically, the cutoff behavior of real scale-free networks previously modeled computationally by Amaral et al. [Proc. Natl. Acad. Sci. U.S.A. 97, 11149 (2000)] and others. We present a mathematical model that can explain several existing computational scale-free network generation models. This yields a theoretical basis to understand cutoff behavior in complex networks, previously treated only with simulations using...

It is commonly believed that real networks are scale-free and fraction of nodes $P(k)$ with degree $k$ satisfies the power law $P(k) \propto k^{-\gamma} \text{ for } k > k_{min} > 0$. Preferential attachment is the mechanism that has been considered responsible for such organization of these networks. In many real networks, degree distribution before the $k_{min}$ varies very slowly to the extent of being uniform as compared with the degree distribution for $k > k_{min}$ . In...

We show that the protein-protein interaction networks can be surprisingly well described by a very simple evolution model of duplication and divergence. The model exhibits a remarkably rich behavior depending on a single parameter, the probability to retain a duplicated link during divergence. When this parameter is large, the network growth is not self-averaging and an average vertex degree increases algebraically. The lack of self-averaging results in a great diversity of n...

Complex networks in different areas exhibit degree distributions with heavy upper tail. A preferential attachment mechanism in a growth process produces a graph with this feature. We herein investigate a variant of the simple preferential attachment model, whose modifications are interesting for two main reasons: to analyze more realistic models and to study the robustness of the scale free behavior of the degree distribution. We introduce and study a model which takes into a...

We study a model for the evolution of chemical species under a combination of population dynamics on a short time scale and a selection mechanism on a longer time scale. Least fit nodes are replaced by new nodes whose links are attached to the nodes of the given network via preferential attachment. In contrast to a random attachment of newly incoming nodes that was used in previous work, this preferential attachment mechanism accelerates the generation of a so-called autocata...

There has been a rich interplay in recent years between (i) empirical investigations of real world dynamic networks, (ii) analytical modeling of the microscopic mechanisms that drive the emergence of such networks, and (iii) harnessing of these mechanisms to either manipulate existing networks, or engineer new networks for specific tasks. We continue in this vein, and study the deletion phenomenon in the web by following two different sets of web-sites (each comprising more t...

Systems as diverse as genetic networks or the world wide web are best described as networks with complex topology. A common property of many large networks is that the vertex connectivities follow a scale-free power-law distribution. This feature is found to be a consequence of the two generic mechanisms that networks expand continuously by the addition of new vertices, and new vertices attach preferentially to already well connected sites. A model based on these two ingredie...