Controlled Markovian dynamics of graphs: unbiased generation of random graphs with prescribed topological properties

Because of the huge number of graphs possible even with a small number of nodes, inference on network structure is known to be a challenging problem. Generating large random directed graphs with prescribed probabilities of occurrences of some meaningful patterns (motifs) is also difficult. We show how to generate such random graphs according to a formal probabilistic representation, using fast Markov chain Monte Carlo methods to sample them. As an illustration, we generate re...

We develop a statistical mechanics approach for random networks with uncorrelated vertices. We construct equilibrium statistical ensembles of such networks and obtain their partition functions and main characteristics. We find simple dynamical construction procedures that produce equilibrium uncorrelated random graphs with an arbitrary degree distribution. In particular, we show that in equilibrium uncorrelated networks, fat-tailed degree distributions may exist only starting...

The random graph of Erdos and Renyi is one of the oldest and best studied models of a network, and possesses the considerable advantage of being exactly solvable for many of its average properties. However, as a model of real-world networks such as the Internet, social networks or biological networks it leaves a lot to be desired. In particular, it differs from real networks in two crucial ways: it lacks network clustering or transitivity, and it has an unrealistic Poissonian...

We study directed random graphs (random graphs whose edges are directed) as they evolve in discrete time by the addition of nodes and edges. For two distinct evolution strategies, one that forces the graph to a condition of near acyclicity at all times and another that allows the appearance of nontrivial directed cycles, we provide analytic and simulation results related to the distributions of degrees. Within the latter strategy, in particular, we investigate the appearance ...

Sampling random graphs is essential in many applications, and often algorithms use Markov chain Monte Carlo methods to sample uniformly from the space of graphs. However, often there is a need to sample graphs with some property that we are unable, or it is too inefficient, to sample using standard approaches. In this paper, we are interested in sampling graphs from a conditional ensemble of the underlying graph model. We present an algorithm to generate samples from an ensem...

The unconstrained exponential family of random graphs assumes no prior knowledge of the graph before sampling, but it is natural to consider situations where partial information about the graph is known, for example the total number of edges. What does a typical random graph look like, if drawn from an exponential model subject to such constraints? Will there be a similar phase transition phenomenon (as one varies the parameters) as that which occurs in the unconstrained expo...

Choosing a uniformly sampled simple directed graph realization of a degree sequence has many applications, in particular in social networks where self-loops are commonly not allowed. It has been shown in the past that one can perform a Markov chain arc-switching algorithm to sample a simple directed graph uniformly by performing two types of switches: a 2-switch and a directed 3-cycle reorientation. This paper discusses under what circumstances a directed 3-cycle reorientatio...

Statistical properties of evolving random graphs are analyzed using kinetic theory. Treating the linking process dynamically, structural characteristics such as links, paths, cycles, and components are obtained analytically using the rate equation approach. Scaling laws for finite systems are derived using extreme statistics and scaling arguments.

The joint degree matrix of a graph gives the number of edges between vertices of degree i and degree j for every pair (i,j). One can perform restricted swap operations to transform a graph into another with the same joint degree matrix. We prove that the space of all realizations of a given joint degree matrix over a fixed vertex set is connected via these restricted swap operations. This was claimed before, but there is an error in the previous proof, which we illustrate by ...

In this article we give an in depth overview of the recent advances in the field of equilibrium networks. After outlining this topic, we provide a novel way of defining equilibrium graph (network) ensembles. We illustrate this concept on the classical random graph model and then survey a large variety of recently studied network models. Next, we analyze the structural properties of the graphs in these ensembles in terms of both local and global characteristics, such as degree...