Retrieving Infinite Numbers of Patterns in a Spin-Glass Model of Immune Networks

We consider the problem of self tolerance in the frame of a minimalistic model of the idiotypic network. A node of this network represents a population of B lymphocytes of the same idiotype which is encoded by a bit string. The links of the network connect nodes with (nearly) complementary strings. The population of a node survives if the number of occupied neighbours is not too small and not too large. There is an influx of lymphocytes with random idiotype from the bone marr...

We introduce a class of weighted graphs whose properties are meant to mimic the topological features of idiotypic networks, namely the interaction networks involving the B-core of the immune system. Each node is endowed with a bit-string representing the idiotypic specificity of the corresponding B cell and a proper distance between any couple of bit-strings provides the coupling strength between the two nodes. We show that a biased distribution of the entries in bit-strings ...

Biological systems, unlike physical or chemical systems, are characterized by the very inhomogeneous distribution of their components. The immune system, in particular, is notable for self-organizing its structure. Classically, the dynamics of natural systems have been described using differential equations. But, differential equation models fail to account for the emergence of large-scale inhomogeneities and for the influence of inhomogeneity on the overall dynamics of biolo...

In this talk I will review the approach to spin glasses based on the spontaneously broken replica symmetry. I will concentrate my attention mostly on more general ideas, skipping technical details and stressing the characteristic predictions of this approach. After the introduction of the replica method, the predicted structure of states is investigated in details, paying a particular attention to the local overlaps and to the structure of the clusters. I will finally study t...

Understanding and modelling the complexity of the immune system is a challenge that is shared by the ImmunoComplexiT$^1$ thematic network from the RNSC. The immune system is a complex biological, adaptive, highly diversified, self-organized and degenerative cognitive network of entities, allowing for a robust and resilient system with emergent properties such as anamnestic responses and regulation. The adaptive immune system has evolved into a complex system of billions of hi...

We consider the storage properties of temporal patterns, i.e. cycles of finite lengths, in neural networks represented by (generally asymmetric) spin glasses defined on random graphs. Inspired by the observation that dynamics on sparse systems have more basins of attractions than the dynamics of densely connected ones, we consider the attractors of a greedy dynamics in sparse topologies, considered as proxy for the stored memories. We enumerate them using numerical simulation...

A Cayley tree model of idiotypic networks that includes both B cell and antibody dynamics is formulated and analyzed. As in models with B cells only, localized states exist in the network with limited numbers of activated clones surrounded by virgin or near-virgin clones. The existence and stability of these localized network states are explored as a function of model parameters. As in previous models that have included antibody, the stability of immune and tolerant localized...

Statistical mechanics of spin glasses is one of the main strands toward a comprehension of information processing by neural networks and learning machines. Tackling this approach, at the fairly standard replica symmetric level of description, recently Hebbian attractor networks with multi-node interactions (often called Dense Associative Memories) have been shown to outperform their classical pairwise counterparts in a number of tasks, from their robustness against adversaria...

The immune system recognizes a myriad of invading pathogens and their toxic products. It does so with a finite repertoire of antibodies and T cell receptors. We here describe theories that quantify the immune system dynamics. We describe how the immune system recognizes antigens by searching the large space of receptor molecules. We consider in some detail the theories that quantify the immune response to influenza and dengue fever. We review theoretical descriptions of the c...

Some interesting recent advances in the theoretical understanding of neural networks have been informed by results from the physics of disordered many-body systems. Motivated by these findings, this work uses the replica technique to study the mathematically tractable bipartite Sherrington-Kirkpatrick (SK) spin glass model, which is formally similar to a Restricted Boltzmann Machine (RBM) neural network. The bipartite SK model has been previously studied assuming replica symm...