Statistical mechanics unifies different ecological patterns

In this paper an alternative approach to statistical mechanics based on the maximum information entropy principle (MaxEnt) is examined, specifically its close relation with the Gibbs method of ensembles. It is shown that the MaxEnt formalism is the logical extension of the Gibbs formalism of equilibrium statistical mechanics that is entirely independent of the frequentist interpretation of probabilities only as factual (i.e. experimentally verifiable) properties of the real w...

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions accounting for general empirical patterns in communities of competing species. However, while neutral theory in well-mixed ecosystems is mathematically well understood, spatial models still present several open problems, limiting the quanti...

Food webs are complex ecological networks whose structure is both ecologically and statistically constrained, with many network properties being correlated with each other. Despite the recognition of these invariable relationships in food webs, the use of the principle of maximum entropy (MaxEnt) in network ecology is still rare. This is surprising considering that MaxEnt is a statistical tool precisely designed for understanding and predicting many different types of constra...

We analyze the properties of seven community food webs from a variety of environments--including freshwater, marine-freshwater interfaces and terrestrial environments. We uncover quantitative unifying patterns that describe the properties of the diverse trophic webs considered and suggest that statistical physics concepts such as scaling and universality may be useful in the description of ecosystems. Specifically, we find that several quantities characterizing these diverse ...

One of the properties that make ecological systems so unique is the range of complex behavioural patterns that can be exhibited by even the simplest communities with only a few species. Much of this complexity is commonly attributed to stochastic factors which have very high-degrees of freedom. Orthodox study of the evolution of these simple networks has generally been limited in its ability to explain complexity, since it restricts evolutionary adaptation to an inertia-free ...

A central question in ecology is to understand the ecological processes that shape community structure. Niche-based theories have emphasized the important role played by competition for maintaining species diversity. Many of these insights have been derived using MacArthur's consumer resource model (MCRM) or its generalizations. Most theoretical work on the MCRM has focused on small ecosystems with a few species and resources. However theoretical insights derived from small e...

The rapid expansion of citizen science initiatives has led to a significant growth of biodiversity databases, and particularly presence-only (PO) observations. PO data are invaluable for understanding species distributions and their dynamics, but their use in a Species Distribution Model (SDM) is curtailed by sampling biases and the lack of information on absences. Poisson point processes are widely used for SDMs, with Maxent being one of the most popular methods. Maxent maxi...

Statistical thermodynamics has a universal appeal that extends beyond molecular systems, and yet, as its tools are being transplanted to fields outside physics, the fundamental question, \textit{what is thermodynamics?}, has remained unanswered. We answer this question here. Generalized statistical thermodynamics is a variational calculus of probability distributions. It is independent of physical hypotheses but provides the means to incorporate our knowledge, assumptions and...

Bayesian maxent lets one integrate thermal physics and information theory points of view in the quantitative study of complex systems. Since net surprisal (a free energy analog for measuring "departures from expected") allows one to place second law constraints on mutual information (a multi-moment measure of correlations), it makes a quantitative case for the role of reversible thermalization in the natural history of invention, and suggests multiscale strategies to monitor ...

The population dynamics and stability of ecosystems of interacting species is studied from the perspective of non-equilibrium thermodynamics by assuming that species, through their biotic and abiotic interactions, are units of entropy production and exchange in an open thermodynamic system with constant external constraints. Within the context of the linear theory of irreversible thermodynamics, such a system will naturally evolve towards a stable stationary state in which th...