March 28, 2007
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March 8, 2024
Ecosystems are among the most interesting and well-studied examples of self-organized complex systems. Community ecology, the study of how species interact with each other and the environment, has a rich tradition. Over the last few years, there has been a growing theoretical and experimental interest in these problems from the physics and quantitative biology communities. Here, we give an overview of community ecology, highlighting the deep connections between ecology and st...
August 31, 2022
In this report, I will review some of the most used models in theoretical ecology along with appealing reformulations and recent results in terms of diversity, stability, and functioning of large well-mixed ecological communities.
January 8, 2009
Degree distributions have been widely used to characterize biological networks including food webs, and play a vital role in recent models of food web structure. While food webs degree distributions have been suggested to follow various functional forms, to date there has been no mechanistic or statistical explanation for these forms. Here I introduce models for the degree distributions of food webs based on the principle of maximum entropy (MaxEnt) constrained by the number ...
June 6, 2014
Many species of plants are found in regions to which they are alien and their global distribution has been found to exhibit several remarkable patterns,characterised by exponential functions of the kind that could arise through versions of MacArthur's broken stick. We show here that these various patterns are all quantitatively reproduced by a simple algorithm, in terms of a single parameter- a single stick to be broken. This algorithm admits a biological interpretation in te...
December 21, 2012
Zipf's law, and power laws in general, have attracted and continue to attract considerable attention in a wide variety of disciplines - from astronomy to demographics to software structure to economics to linguistics to zoology, and even warfare. A recent model of random group formation [RGF] attempts a general explanation of such phenomena based on Jaynes' notion of maximum entropy applied to a particular choice of cost function. In the present article I argue that the cost ...
Statistical Physics has proved essential to analyze multi-agent environments. Motivated by the empirical observation of various non-equilibrium features in Barro Colorado and other ecological systems, we analyze a plant-species abundance model, presenting analytical evidence of scale-invariant plant clusters and non-trivial emergent modular correlations. Such first theoretical confirmation of a scale-invariant region, based on percolation processes, reproduces the key feature...
March 5, 2016
The method of optimizing entropy is used to (i) conduct Asymptotic Hypothesis Testing and (ii) determine the particle distribution for which Entropy is maximized. This paper focuses on two related applications of Information Theory: Statistics and Statistical Mechanics.
May 7, 2015
Taylor's power law is one of the mostly widely known empirical patterns in ecology discovered in the 20th century. It states that the variance of species population density scales as a power-law function of the mean population density. Taylor's power law was named after the British ecologist Lionel Roy Taylor. During the past half-century, Taylor's power law was confirmed for thousands of biological species and even for non-biological quantities. Numerous theories and models ...
September 5, 2016
Organisms shape their own environment, which in turn affects their survival. This feedback becomes especially important for communities containing a large number of species; however, few existing approaches allow studying this regime, except in simulations. Here, we use methods of statistical physics to analytically solve a classic ecological model of resource competition introduced by MacArthur in 1969. We show that the non-intuitive phenomenology of highly diverse ecosystem...
January 6, 2015
Probability distributions having power-law tails are observed in a broad range of social, economic, and biological systems. We describe here a potentially useful common framework. We derive distribution functions $\{p_k\}$ for situations in which a `joiner particle' $k$ pays some form of price to enter a `community' of size $k-1$, where costs are subject to economies-of-scale (EOS). Maximizing the Boltzmann-Gibbs-Shannon entropy subject to this energy-like constraint predicts...